No namespace
| Console_CommandLine_Action_ExtendedHelp | |
| LightOpenID | This class provides a simple interface for OpenID (1.1 and 2.0) authentication. Supports Yadis discovery. The authentication process is stateless/dumb. |
| Log_firebugJSON | |
| WebService | Abstract Base class for all web services. |
| CLI_Command | interface for classes implementing a command line application subcommand |
| acquire_database | checks if database file already exists, if not downloads it from the server. returns full path to database file |
| cli_error_handler | |
| connect_queue_db | |
| create_job | |
| display_feature | |
| display_feature_by_id | |
| display_isoform_by_id | |
| display_unigene_by_id | |
| download | |
| execute_command | |
| execute_job | |
| execute_query_dir | |
| get_db_connection | |
| get_job_results | |
| get_program_databases | |
| myErrorHandler | |
| pdo_connect | |
| report_results_cleanup | |
| requestVal | |
| smarty_function_call_webservice | |
| smarty_function_dbxreflink | |
| smarty_function_interprolink | |
| smarty_function_publink | |
| smarty_modifier_clean_id | |
| split_fasta | |
| unzip |