Overview

Namespaces

  • cli_db
    • propel
      • map
      • om
  • cli_import
  • LoggedPDO
  • None
  • PHP
  • webservices
    • cart
    • combisearch
    • details
      • annotations
        • feature
    • graphs
      • barplot
      • genome
    • listing
    • queue

Classes

  • AbstractImporter
  • Importer_Annotations_Dbxref
  • Importer_Annotations_Description
  • Importer_Annotations_EC
  • Importer_Annotations_GO
  • Importer_Annotations_Interpro
  • Importer_Annotations_MapMan
  • Importer_Annotations_Repeatmasker
  • Importer_Differential_Expressions
  • Importer_Expressions
  • Importer_Sequence_Ids
  • Importer_Sequences_FASTA

Interfaces

  • Importer
  • Overview
  • Namespace
  • Class
  • Tree

Namespace cli_import

Classes summary
AbstractImporter abstract class as parent for tbro-import commands. implements standard behavior for command-line interaction. final importers only need to implement the import method
Importer_Annotations_Dbxref abstract database crossreference importer
Importer_Annotations_Description importer for textual descriptions
Importer_Annotations_EC importer for EC crossreferences
Importer_Annotations_GO importer for GO crossreferences
Importer_Annotations_Interpro importer for interpro Annotations
Importer_Annotations_MapMan abstract database crossreference importer
Importer_Annotations_Repeatmasker importer for repeatmasker results
Importer_Differential_Expressions importer for differential expressions
Importer_Expressions abstract class as parent for tbro-import commands. implements standard behavior for command-line interaction. final importers only need to implement the import method
Importer_Sequence_Ids importer for sequence ids and mapping
Importer_Sequences_FASTA importer for fasta files. created predicted peptides.
Interfaces summary
Importer
tbro API documentation generated by ApiGen 2.8.0