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Classes

  • AbstractImporter
  • Importer_Annotations_Dbxref
  • Importer_Annotations_Description
  • Importer_Annotations_EC
  • Importer_Annotations_GO
  • Importer_Annotations_Interpro
  • Importer_Annotations_MapMan
  • Importer_Annotations_Repeatmasker
  • Importer_Differential_Expressions
  • Importer_Expressions
  • Importer_Sequence_Ids
  • Importer_Sequences_FASTA

Interfaces

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Class Importer_Annotations_MapMan

abstract database crossreference importer

cli_import\AbstractImporter implements CLI_Command, cli_import\Importer
Extended by cli_import\Importer_Annotations_Dbxref
Extended by cli_import\Importer_Annotations_MapMan
Namespace: cli_import
Located at src/cli/import/commands/Importer_Annotations_MapMan.php
Methods summary
public static
# CLI_commandName( )

InheritDoc

public static
# CLI_commandDescription( )

InheritDoc

public static DB
# get_or_create_DB( String $dbname )

add entry to DB table if non-existant and return DB id in any case

add entry to DB table if non-existant and return DB id in any case

Parameters

$dbname
String
$dbname name of DB to add

Returns

DB
id
public static Array
# import( Array $options )

Parameters

$options
Array
$options user-provided command-line options

Returns

Array
results

Throws

Exception
on error
ErrorException
on error

InheritDoc

public static
# CLI_longHelp( )

InheritDoc

Overrides

cli_import\Importer_Annotations_Dbxref::CLI_longHelp()
Methods inherited from cli_import\Importer_Annotations_Dbxref
_import()
Methods inherited from cli_import\AbstractImporter
CLI_checkRequiredOpts(), CLI_execute(), CLI_getCommand(), dieOnMissingArg(), preCommitMsg(), setLineCount(), updateProgress()
Properties summary
public static String $db_name 'MapMan'
#

imported Mapman BINs will be linked as dbxref to a DB with this name

imported Mapman BINs will be linked as dbxref to a DB with this name

Properties inherited from cli_import\AbstractImporter
$log
tbro API documentation generated by ApiGen 2.8.0