Class Importer_Annotations_Dbxref

abstract database crossreference importer

cli_import\AbstractImporter implements CLI_Command, cli_import\Importer

Extended by

cli_import\Importer_Annotations_Dbxref

Direct known subclasses

cli_import\Importer_Annotations_EC, cli_import\Importer_Annotations_GO, cli_import\Importer_Annotations_MapMan

Abstract
Namespace: cli_import
Located at src/cli/import/classes/Importer_Annotations_Dbxref.php

Methods summary
`public static array`	# `_import( Array $options, integer $feature_pos = 0, integer $dbxref_pos = 1, String $separator = "\t" )` takes a CSV as $options['file'] takes a CSV as $options['file'] Parameters `$options` `Array` $options user-specified command-line options `$feature_pos` `integer` $feature_pos column with feature name `$dbxref_pos` `integer` $dbxref_pos column with crossref `$separator` `String` $separator column separator, defaults to TAB Returns `array` to be displayed as table Throws `Exception` `ErrorException`
`public static`	# `CLI_longHelp( )` InheritDoc

Methods inherited from cli_import\AbstractImporter
`CLI_checkRequiredOpts(), CLI_execute(), CLI_getCommand(), dieOnMissingArg(), preCommitMsg(), setLineCount(), updateProgress()`

Methods inherited from cli_import\Importer
`import()`

Methods inherited from CLI_Command
`CLI_commandDescription(), CLI_commandName()`

Properties inherited from cli_import\AbstractImporter
`$log`