Class Importer_Sequences_FASTA
importer for fasta files. created predicted peptides.
- cli_import\AbstractImporter implements CLI_Command, cli_import\Importer
- cli_import\Importer_Sequences_FASTA
public static
list($description,$sequence)
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read_fasta( resource $fasta_handle )
reads the next fasta sequence from file handle $fasta_handle and returns a list of description and sequence (without whitespace and newlines) |
public static
string
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prepare_predpep_name( string $isoform_name, integer $left, integer $right, char $direction )
Converts values to String that would be stored as Name (Suffix of UniqueName) in DB |
public static
Array
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public static
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public static
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public static
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CLI_checkRequiredOpts(),
CLI_execute(),
CLI_getCommand(),
dieOnMissingArg(),
preCommitMsg(),
setLineCount(),
updateProgress()
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$log
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