Overview
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cli_db
propel
map
om
cli_import
LoggedPDO
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webservices
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combisearch
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annotations
feature
graphs
barplot
genome
listing
queue
Classes
cli_db\AbstractTable
cli_db\Acquisition
cli_db\Analysis
cli_db\Assay
cli_db\Biomaterial
cli_db\Contact
cli_db\Feature
cli_db\Organism
cli_db\propel\Acquisition
cli_db\propel\AcquisitionPeer
cli_db\propel\AcquisitionQuery
cli_db\propel\Analysis
cli_db\propel\AnalysisPeer
cli_db\propel\AnalysisQuery
cli_db\propel\Assay
cli_db\propel\AssayBiomaterial
cli_db\propel\AssayBiomaterialPeer
cli_db\propel\AssayBiomaterialQuery
cli_db\propel\AssayPeer
cli_db\propel\AssayQuery
cli_db\propel\Biomaterial
cli_db\propel\BiomaterialPeer
cli_db\propel\Biomaterialprop
cli_db\propel\BiomaterialpropPeer
cli_db\propel\BiomaterialpropQuery
cli_db\propel\BiomaterialQuery
cli_db\propel\BiomaterialRelationship
cli_db\propel\BiomaterialRelationshipPeer
cli_db\propel\BiomaterialRelationshipQuery
cli_db\propel\Contact
cli_db\propel\ContactPeer
cli_db\propel\ContactQuery
cli_db\propel\Cv
cli_db\propel\CvPeer
cli_db\propel\CvQuery
cli_db\propel\Cvterm
cli_db\propel\CvtermPeer
cli_db\propel\CvtermQuery
cli_db\propel\Db
cli_db\propel\DbPeer
cli_db\propel\DbQuery
cli_db\propel\Dbxref
cli_db\propel\DbxrefPeer
cli_db\propel\DbxrefQuery
cli_db\propel\Feature
cli_db\propel\FeatureCvterm
cli_db\propel\FeatureCvtermDbxref
cli_db\propel\FeatureCvtermDbxrefPeer
cli_db\propel\FeatureCvtermDbxrefQuery
cli_db\propel\FeatureCvtermPeer
cli_db\propel\FeatureCvtermprop
cli_db\propel\FeatureCvtermpropPeer
cli_db\propel\FeatureCvtermpropQuery
cli_db\propel\FeatureCvtermPub
cli_db\propel\FeatureCvtermPubPeer
cli_db\propel\FeatureCvtermPubQuery
cli_db\propel\FeatureCvtermQuery
cli_db\propel\FeatureDbxref
cli_db\propel\FeatureDbxrefPeer
cli_db\propel\FeatureDbxrefQuery
cli_db\propel\FeaturePeer
cli_db\propel\FeaturePub
cli_db\propel\FeaturePubPeer
cli_db\propel\FeaturePubQuery
cli_db\propel\FeatureQuery
cli_db\propel\FeatureSynonym
cli_db\propel\FeatureSynonymPeer
cli_db\propel\FeatureSynonymQuery
cli_db\propel\map\AcquisitionTableMap
cli_db\propel\map\AnalysisTableMap
cli_db\propel\map\AssayBiomaterialTableMap
cli_db\propel\map\AssayTableMap
cli_db\propel\map\BiomaterialpropTableMap
cli_db\propel\map\BiomaterialRelationshipTableMap
cli_db\propel\map\BiomaterialTableMap
cli_db\propel\map\ContactTableMap
cli_db\propel\map\CvTableMap
cli_db\propel\map\CvtermTableMap
cli_db\propel\map\DbTableMap
cli_db\propel\map\DbxrefTableMap
cli_db\propel\map\FeatureCvtermDbxrefTableMap
cli_db\propel\map\FeatureCvtermpropTableMap
cli_db\propel\map\FeatureCvtermPubTableMap
cli_db\propel\map\FeatureCvtermTableMap
cli_db\propel\map\FeatureDbxrefTableMap
cli_db\propel\map\FeaturePubTableMap
cli_db\propel\map\FeatureSynonymTableMap
cli_db\propel\map\FeatureTableMap
cli_db\propel\map\OrganismTableMap
cli_db\propel\map\ProtocolTableMap
cli_db\propel\map\PubauthorTableMap
cli_db\propel\map\PubDbxrefTableMap
cli_db\propel\map\PubpropTableMap
cli_db\propel\map\PubRelationshipTableMap
cli_db\propel\map\PubTableMap
cli_db\propel\map\QuantificationTableMap
cli_db\propel\map\SynonymTableMap
cli_db\propel\om\BaseAcquisition
cli_db\propel\om\BaseAcquisitionPeer
cli_db\propel\om\BaseAcquisitionQuery
cli_db\propel\om\BaseAnalysis
cli_db\propel\om\BaseAnalysisPeer
cli_db\propel\om\BaseAnalysisQuery
cli_db\propel\om\BaseAssay
cli_db\propel\om\BaseAssayBiomaterial
cli_db\propel\om\BaseAssayBiomaterialPeer
cli_db\propel\om\BaseAssayBiomaterialQuery
cli_db\propel\om\BaseAssayPeer
cli_db\propel\om\BaseAssayQuery
cli_db\propel\om\BaseBiomaterial
cli_db\propel\om\BaseBiomaterialPeer
cli_db\propel\om\BaseBiomaterialprop
cli_db\propel\om\BaseBiomaterialpropPeer
cli_db\propel\om\BaseBiomaterialpropQuery
cli_db\propel\om\BaseBiomaterialQuery
cli_db\propel\om\BaseBiomaterialRelationship
cli_db\propel\om\BaseBiomaterialRelationshipPeer
cli_db\propel\om\BaseBiomaterialRelationshipQuery
cli_db\propel\om\BaseContact
cli_db\propel\om\BaseContactPeer
cli_db\propel\om\BaseContactQuery
cli_db\propel\om\BaseCv
cli_db\propel\om\BaseCvPeer
cli_db\propel\om\BaseCvQuery
cli_db\propel\om\BaseCvterm
cli_db\propel\om\BaseCvtermPeer
cli_db\propel\om\BaseCvtermQuery
cli_db\propel\om\BaseDb
cli_db\propel\om\BaseDbPeer
cli_db\propel\om\BaseDbQuery
cli_db\propel\om\BaseDbxref
cli_db\propel\om\BaseDbxrefPeer
cli_db\propel\om\BaseDbxrefQuery
cli_db\propel\om\BaseFeature
cli_db\propel\om\BaseFeatureCvterm
cli_db\propel\om\BaseFeatureCvtermDbxref
cli_db\propel\om\BaseFeatureCvtermDbxrefPeer
cli_db\propel\om\BaseFeatureCvtermDbxrefQuery
cli_db\propel\om\BaseFeatureCvtermPeer
cli_db\propel\om\BaseFeatureCvtermprop
cli_db\propel\om\BaseFeatureCvtermpropPeer
cli_db\propel\om\BaseFeatureCvtermpropQuery
cli_db\propel\om\BaseFeatureCvtermPub
cli_db\propel\om\BaseFeatureCvtermPubPeer
cli_db\propel\om\BaseFeatureCvtermPubQuery
cli_db\propel\om\BaseFeatureCvtermQuery
cli_db\propel\om\BaseFeatureDbxref
cli_db\propel\om\BaseFeatureDbxrefPeer
cli_db\propel\om\BaseFeatureDbxrefQuery
cli_db\propel\om\BaseFeaturePeer
cli_db\propel\om\BaseFeaturePub
cli_db\propel\om\BaseFeaturePubPeer
cli_db\propel\om\BaseFeaturePubQuery
cli_db\propel\om\BaseFeatureQuery
cli_db\propel\om\BaseFeatureSynonym
cli_db\propel\om\BaseFeatureSynonymPeer
cli_db\propel\om\BaseFeatureSynonymQuery
cli_db\propel\om\BaseOrganism
cli_db\propel\om\BaseOrganismPeer
cli_db\propel\om\BaseOrganismQuery
cli_db\propel\om\BaseProtocol
cli_db\propel\om\BaseProtocolPeer
cli_db\propel\om\BaseProtocolQuery
cli_db\propel\om\BasePub
cli_db\propel\om\BasePubauthor
cli_db\propel\om\BasePubauthorPeer
cli_db\propel\om\BasePubauthorQuery
cli_db\propel\om\BasePubDbxref
cli_db\propel\om\BasePubDbxrefPeer
cli_db\propel\om\BasePubDbxrefQuery
cli_db\propel\om\BasePubPeer
cli_db\propel\om\BasePubprop
cli_db\propel\om\BasePubpropPeer
cli_db\propel\om\BasePubpropQuery
cli_db\propel\om\BasePubQuery
cli_db\propel\om\BasePubRelationship
cli_db\propel\om\BasePubRelationshipPeer
cli_db\propel\om\BasePubRelationshipQuery
cli_db\propel\om\BaseQuantification
cli_db\propel\om\BaseQuantificationPeer
cli_db\propel\om\BaseQuantificationQuery
cli_db\propel\om\BaseSynonym
cli_db\propel\om\BaseSynonymPeer
cli_db\propel\om\BaseSynonymQuery
cli_db\propel\Organism
cli_db\propel\OrganismPeer
cli_db\propel\OrganismQuery
cli_db\propel\Protocol
cli_db\propel\ProtocolPeer
cli_db\propel\ProtocolQuery
cli_db\propel\Pub
cli_db\propel\Pubauthor
cli_db\propel\PubauthorPeer
cli_db\propel\PubauthorQuery
cli_db\propel\PubDbxref
cli_db\propel\PubDbxrefPeer
cli_db\propel\PubDbxrefQuery
cli_db\propel\PubPeer
cli_db\propel\Pubprop
cli_db\propel\PubpropPeer
cli_db\propel\PubpropQuery
cli_db\propel\PubQuery
cli_db\propel\PubRelationship
cli_db\propel\PubRelationshipPeer
cli_db\propel\PubRelationshipQuery
cli_db\propel\Quantification
cli_db\propel\QuantificationPeer
cli_db\propel\QuantificationQuery
cli_db\propel\Synonym
cli_db\propel\SynonymPeer
cli_db\propel\SynonymQuery
cli_db\Protocol
cli_db\Publication
cli_db\Quantification
cli_import\AbstractImporter
cli_import\Importer_Annotations_Dbxref
cli_import\Importer_Annotations_Description
cli_import\Importer_Annotations_EC
cli_import\Importer_Annotations_GO
cli_import\Importer_Annotations_Interpro
cli_import\Importer_Annotations_MapMan
cli_import\Importer_Annotations_Repeatmasker
cli_import\Importer_Differential_Expressions
cli_import\Importer_Expressions
cli_import\Importer_Sequence_Ids
cli_import\Importer_Sequences_FASTA
Console_CommandLine_Action_ExtendedHelp
LightOpenID
Log_firebugJSON
LoggedPDO\PDO
LoggedPDO\PDOStatement
PDO
PDOStatement
WebService
webservices\cart\Sync
webservices\combisearch\Hasgo
webservices\combisearch\Hasgo_or_children
webservices\details\annotations\feature\Dbxref
webservices\details\annotations\feature\Interpro_predpeps
webservices\details\annotations\feature\Mapman
webservices\details\annotations\feature\Pub
webservices\details\annotations\feature\Repeatmasker
webservices\details\annotations\feature\Synonym
webservices\details\Features
webservices\details\Isoform
webservices\details\Statistical_information
webservices\details\Unigene
webservices\graphs\barplot\Quantifications
webservices\graphs\genome\Isoform
webservices\listing\Differential_expressions
webservices\listing\Filters
webservices\listing\Filters_diffexp
webservices\listing\Isoforms
webservices\listing\Multisearch
webservices\listing\Organism_release
webservices\listing\Searchbox
webservices\queue\Job_program_databases
webservices\queue\Job_results
webservices\queue\Job_start
Interfaces
CLI_Command
cli_db\Table
cli_import\Importer
Traversable
Exceptions
ErrorException
Exception
Functions
acquire_database
cli_error_handler
connect_queue_db
create_job
display_feature
display_feature_by_id
display_isoform_by_id
display_unigene_by_id
download
execute_command
execute_job
execute_query_dir
get_db_connection
get_job_results
get_program_databases
myErrorHandler
pdo_connect
report_results_cleanup
requestVal
smarty_function_call_webservice
smarty_function_dbxreflink
smarty_function_interprolink
smarty_function_publink
smarty_modifier_clean_id
split_fasta
unzip
Overview
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tbro
Namespaces summary
cli_db
cli_db\propel
cli_db\propel\map
cli_db\propel\om
cli_import
LoggedPDO
None
PHP
webservices
webservices\cart
webservices\combisearch
webservices\details
webservices\details\annotations
webservices\details\annotations\feature
webservices\graphs
webservices\graphs\barplot
webservices\graphs\genome
webservices\listing
webservices\queue