Overview

Namespaces

  • cli_db
    • propel
      • map
      • om
  • cli_import
  • LoggedPDO
  • None
  • PHP
  • webservices
    • cart
    • combisearch
    • details
      • annotations
        • feature
    • graphs
      • barplot
      • genome
    • listing
    • queue

Classes

  • AbstractTable
  • Acquisition
  • Analysis
  • Assay
  • Biomaterial
  • Contact
  • Feature
  • Organism
  • Protocol
  • Publication
  • Quantification

Interfaces

  • Table
  • Overview
  • Namespace
  • Class
  • Tree

Class Assay

abstract class as parent for tbro-db commands. implements standard behavior for insert, update, delete, list and display subcommands

cli_db\AbstractTable implements CLI_Command, cli_db\Table
Extended by cli_db\Assay
Namespace: cli_db
Located at src/cli/db/commands/Assay.php
Methods summary
public static
# getKeys( )

Inheritdoc

public static
# CLI_commandDescription( )

Inheritdoc

public static
# CLI_commandName( )

Inheritdoc

public static
# CLI_longHelp( )

Inheritdoc

public static
# getSubCommands( )

Inheritdoc

public static
# getPropelClass( )

Inheritdoc

protected static
# command_insert_set_defaults( BaseObject $item )

Parameters

$item
BaseObject
$item

Inheritdoc

Overrides

cli_db\AbstractTable::command_insert_set_defaults()
protected static
# command_details( Array $options, Array $keys )

Parameters

$options
Array
$options user-specified command line parameters
$keys
Array
$keys result from self::getKeys()

Inheritdoc

overwritten to show linked samples

Overrides

cli_db\AbstractTable::command_details()
protected static type
# command_link_biomaterial_sample( Array $options, Array $keys )

links given biomaterial sample against this assay

links given biomaterial sample against this assay

Parameters

$options
Array
$options user-specified command line parameters
$keys
Array
$keys result from self::getKeys()

Returns

type
protected static type
# command_unlink_biomaterial_sample( Array $options, Array $keys )

unlinks given biomaterial sample from this assay

unlinks given biomaterial sample from this assay

Parameters

$options
Array
$options user-specified command line parameters
$keys
Array
$keys result from self::getKeys()

Returns

type
Methods inherited from cli_db\AbstractTable
CLI_checkRequiredOpts(), CLI_execute(), CLI_getCommand(), command_delete(), command_delete_confirm(), command_insert(), command_list(), command_update(), prepareQueryResult(), printTable(), setKeys()
tbro API documentation generated by ApiGen 2.8.0