Overview

Namespaces

  • cli_db
    • propel
      • map
      • om
  • cli_import
  • LoggedPDO
  • None
  • PHP
  • webservices
    • cart
    • combisearch
    • details
      • annotations
        • feature
    • graphs
      • barplot
      • genome
    • listing
    • queue

Classes

  • AbstractImporter
  • Importer_Annotations_Dbxref
  • Importer_Annotations_Description
  • Importer_Annotations_EC
  • Importer_Annotations_GO
  • Importer_Annotations_Interpro
  • Importer_Annotations_MapMan
  • Importer_Annotations_Repeatmasker
  • Importer_Differential_Expressions
  • Importer_Expressions
  • Importer_Sequence_Ids
  • Importer_Sequences_FASTA

Interfaces

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Class Importer_Annotations_Interpro

importer for interpro Annotations

cli_import\AbstractImporter implements CLI_Command, cli_import\Importer
Extended by cli_import\Importer_Annotations_Interpro
Namespace: cli_import
Located at src/cli/import/commands/Importer_Annotations_Interpro.php
Methods summary
public static Array
# import( Array $options )

Parameters

$options
Array
$options user-provided command-line options

Returns

Array
results

Throws

Exception
on error
ErrorException
on error

InheritDoc

public static Console_CommandLine_Command
# CLI_getCommand( Console_CommandLine $parser )

Parameters

$parser
Console_CommandLine
$parser

Returns

Console_CommandLine_Command

InheritDoc

Overrides

cli_import\AbstractImporter::CLI_getCommand()
public static
# CLI_checkRequiredOpts( Console_CommandLine_Result $command )

Parameters

$command
Console_CommandLine_Result
$command

Throws

Exception
on missing argument

InheritDoc

Overrides

cli_import\AbstractImporter::CLI_checkRequiredOpts()
public static
# CLI_commandDescription( )

InheritDoc

public static
# CLI_commandName( )

InheritDoc

public static
# CLI_longHelp( )

InheritDoc

Methods inherited from cli_import\AbstractImporter
CLI_execute(), dieOnMissingArg(), preCommitMsg(), setLineCount(), updateProgress()
Properties inherited from cli_import\AbstractImporter
$log
tbro API documentation generated by ApiGen 2.8.0