Overview

Namespaces

  • cli_db
    • propel
      • map
      • om
  • cli_import
  • LoggedPDO
  • None
  • PHP
  • webservices
    • cart
    • combisearch
    • details
      • annotations
        • feature
    • graphs
      • barplot
      • genome
    • listing
    • queue

Classes

  • Console_CommandLine_Action_ExtendedHelp
  • LightOpenID
  • Log_firebugJSON
  • WebService

Interfaces

  • CLI_Command

Functions

  • acquire_database
  • cli_error_handler
  • connect_queue_db
  • create_job
  • display_feature
  • display_feature_by_id
  • display_isoform_by_id
  • display_unigene_by_id
  • download
  • execute_command
  • execute_job
  • execute_query_dir
  • get_db_connection
  • get_job_results
  • get_program_databases
  • myErrorHandler
  • pdo_connect
  • report_results_cleanup
  • requestVal
  • smarty_function_call_webservice
  • smarty_function_dbxreflink
  • smarty_function_interprolink
  • smarty_function_publink
  • smarty_modifier_clean_id
  • split_fasta
  • unzip
  • Overview
  • Namespace
  • Function
  • Tree
 1: <?php
 2: function pdo_connect() {
 3:     /*require_once '../../cli/src/shared/libs/loggedPDO/PDO.php';
 4:     $pdo = new \LoggedPDO\PDO(JOB_DB_CONNSTR, JOB_DB_USERNAME, JOB_DB_PASSWORD, array(PDO::ATTR_ERRMODE => PDO::ERRMODE_EXCEPTION, PDO::ATTR_PERSISTENT => false),
 5:                     Log::factory('console', '', 'PDO'));
 6:     return $pdo;*/
 7:     $pdo = new PDO(JOB_DB_CONNSTR, JOB_DB_USERNAME, JOB_DB_PASSWORD, array(PDO::ATTR_PERSISTENT => false, PDO::ATTR_EMULATE_PREPARES => false));
 8:     $pdo->setAttribute(PDO::ATTR_ERRMODE, PDO::ERRMODE_EXCEPTION);
 9:     return $pdo;
10: }
11: ?>
12: 
tbro API documentation generated by ApiGen 2.8.0