1: <?php
  2: 
  3: namespace cli_db;
  4: 
  5: require_once ROOT . 'classes/AbstractTable.php';
  6: 
  7: class Analysis extends AbstractTable {
  8: 
  9:     /**
 10:      * @inheritdoc
 11:      */
 12:     public static function getKeys() {
 13:         return array(
 14:             'id' => array(
 15:                 'colname' => 'AnalysisId',
 16:                 'actions' => array(
 17:                     'details' => 'required',
 18:                     'update' => 'required',
 19:                     'delete' => 'required',
 20:                 ),
 21:                 'description' => 'analysis id'
 22:             ),
 23:             'name' => array(
 24:                 'colname' => 'Name',
 25:                 'actions' => array(
 26:                     'insert' => 'optional',
 27:                     'update' => 'optional',
 28:                 ),
 29:                 'description' => 'name'
 30:             ),
 31:             'description' => array(
 32:                 'colname' => 'Description',
 33:                 'actions' => array(
 34:                     'insert' => 'optional',
 35:                     'update' => 'optional',
 36:                 ),
 37:                 'description' => 'description'
 38:             ),
 39:             'program' => array(
 40:                 'colname' => 'Program',
 41:                 'actions' => array(
 42:                     'insert' => 'required',
 43:                     'update' => 'optional',
 44:                 ),
 45:                 'description' => "Program name, e.g. blastx, blastp, sim4, genscan. \nNote: The combination of program, programversion and sourcename has to be unique."
 46:             ),
 47:             'programversion' => array(
 48:                 'colname' => 'Programversion',
 49:                 'actions' => array(
 50:                     'insert' => 'required',
 51:                     'update' => 'optional',
 52:                 ),
 53:                 'description' => 'Version description, e.g. TBLASTX 2.0MP-WashU [09-Nov-2000].'
 54:             ),
 55:             'algorithm' => array(
 56:                 'colname' => 'Algorithm',
 57:                 'actions' => array(
 58:                     'insert' => 'optional',
 59:                     'update' => 'optional',
 60:                 ),
 61:                 'description' => 'Algorithm name, e.g. blast.'
 62:             ),
 63:             'sourcename' => array(
 64:                 'colname' => 'Sourcename',
 65:                 'actions' => array(
 66:                     'insert' => 'required',
 67:                     'update' => 'optional',
 68:                 ),
 69:                 'description' => 'Source name, e.g. cDNA, SwissProt.'
 70:             ),
 71:             'sourceversion' => array(
 72:                 'colname' => 'Sourceversion',
 73:                 'actions' => array(
 74:                     'insert' => 'optional',
 75:                     'update' => 'optional',
 76:                 ),
 77:                 'description' => 'Source version.'
 78:             ),
 79:             'sourceuri' => array(
 80:                 'colname' => 'Sourceuri',
 81:                 'actions' => array(
 82:                     'insert' => 'optional',
 83:                     'update' => 'optional',
 84:                 ),
 85:                 'description' => 'This is an optional, permanent URL or URI for the source of the  analysis. The idea is that someone could recreate the analysis directly by going to this URI and fetching the source data (e.g. the blast database, or the training model).'
 86:             ),
 87:             'timeexecuted' => array(
 88:                 'colname' => 'Timeexecuted',
 89:                 'actions' => array(
 90:                     'insert' => 'optional',
 91:                     'update' => 'optional',
 92:                 ),
 93:                 'description' => 'time of execution'
 94:             ),
 95:         );
 96:     }
 97: 
 98:     /**
 99:      * @inheritdoc
100:      */
101:     public static function CLI_commandDescription() {
102:         return 'Manipulate analyses.';
103:     }
104: 
105:     /**
106:      * @inheritdoc
107:      */
108:     public static function CLI_commandName() {
109:         return 'analysis';
110:     }
111: 
112:     /**
113:      * @inheritdoc
114:      */
115:     public static function CLI_longHelp() {
116:         
117:     }
118: 
119:     /**
120:      * @inheritdoc
121:      */
122:     public static function getSubCommands() {
123:         return array('insert', 'update', 'delete', 'details', 'list');
124:     }
125: 
126:     /**
127:      * @inheritdoc
128:      */
129:     public static function getPropelClass() {
130:         return '\\cli_db\\propel\\Analysis';
131:     }
132: 
133: }
134: 
135: ?>
136: